2008
V.Donde, V. Lopez, B. Lesieutre, A. Pinar, C. Yang, and J. Meza, “Severe Multiple Contingency Screening in Electric Power Systems,” IEEE Transactions on Power Systems, Vol. 23, No. 2, pp. 406-417, 2008.
L.W. Wang, Z. Zhao, and J.C. Meza, “Linear-Scaling Three-Dimensional Fragment Methods for Large-Scale Electronic Structure Calculations,” Physical Review B. 77, 165113, April 2008.
2007
P. Cesarz, G.M. Pomann, L. De la Torre, G. Villarosa, T. Fournoy, A. Pinar, and J. Meza, "Detecting Network Vulnerabilities Through Graph Theoretical Methods,” LBNL-63487, 2007.
J.C. Meza, A. Garcia-Lekue, M.A. Abramson, and J.E. Dennis, “Derivative-Free Optimization Methods for Surface Structure Determination of Nanosystems,” In 6th International Congress on Industrial and Applied Mathematics; Zurich, Switzerland; July 16-20, LBNL-63523, 2007
C. Yang, J.C. Meza, and L.W. Wang, “A Trust Region Direct Constrained Minimization Algorithm for the Kohn-Sham Equation,” SIAM Journal on Scientific Computing Vol. 29, No. 55 pp. 1854-1875, 2007.
C. Yang, J.C. Meza, B. Lee, and L.W. Wang, “KSSOLV - A MATLAB Toolbox for Solving the Kohn-Sham Equation,” Submitted to ACM Transactions on Mathematical Software, October 2007.
A. Pinar, J. Meza, V. Donde, and B. Lesieutre, “Optimization Strategies for the Vulnerability Analysis of the Electric Power Grid,” LBNL-63473, Submitted to SIAM Journal on Optimization.
L.W. Wang, Z. Zhao and J. Meza, “A New Linear Scaling Electronic Structure Calculation Method for Nanoscience Simulations,” Submitted to Physical Review Letters, LBNL-63252, 2007.
C. Yang, W. Gao, and J. Meza, “On the Convergence of the Self-Consistent Field Iteration for a Class of Nonlinear Eigenvalue Problems,” LBNL-63037, 2007.
T. Mayo, T. Pulickal, M. Wilson, E. Lobaton, and J. Meza, “A Benchmark of the Adaptive Constraint Reduction Method for Support Vector Machines on the Supernova Recognition Problem,” 2007.
S. Ewing, D. Huskey, C. Smith, and J. Meza, “Adaptive Parameter Selection for Minimizing the Kohn-Sham Equations,” 2007.
J. Meza, R. Oliva, P. Hough, and P. Williams, “OPT++: An Object-Oriented Toolkit for Nonlinear Optimization,” ACM Transactions on Mathematical Software, Vol. 33, No. 2, June 2007.
2006
V. Donde, V. Lopez, B. Lesieutre, A. Pinar, C. Yang, and J. Meza, “Identification of Severe Multiple Contingencies in Electric Power Systems,” Submitted to IEEE Transactions on Power Systems, LBNL-60511, 2006.
L.W. Wang, Z. Zhao, and J. Meza, “Linear Scaling 3D Fragment Method for Large-Scale Electronic Structure Calculations,” Submitted to Physical Review Letters, also available as LBNL-61691, October 2006.
C. Yang, J. Meza, and L.W. Wang, “A Constrained Optimization Algorithm for Total Energy Minimization in Electronic Structure Calculations,” Journal of Computational Physics, 217, 709-721, 2006.
Z. Zhao, L.W. Wang, and J. Meza, “Motif-Based Hessian Matrix for Ab Initio Geometry Optimization of Nanostructures,” Phys. Rev. B 73, 193309, 2006, also avialable as LBNL-59974.
Z. Zhao, J. Meza, and M. van Hove, “Using Pattern Search Methods for Surface Structure Determination,” J. Phys.: Condensed Matter, 18, 8693-8706, LBNL-57541, 2006.
L.W. Wang, Z. Zhao, and J. Meza, “Petascale Calculations of the Electronic Structures of Nanostructures with Hundreds of Thousands of Processors,” LBNL-63793, 2006.
2001-2005
Z. Zhao, J. Meza, M. van Hove, Using Pattern Search Methods for Surface Structure Determination of Nanostructures, Technical Report LBNL-57541 (2005).
V. Donde, V. Lopez, B. Lesieutre, A. Pinar, C. Yang, J. Meza, Identification of Severe Multiple Contingencies in Electric Power Networks, LBNL-57994, Proceedings 37th North American Power Symposium (2005).
H.D. Simon, W.T. Kramer, D.H. Bailey, M.J. Banda, E.W. Bethel, J.M. Craw, W. Fortney, J.A. Hules, N.L. Meyer, J.C. Meza, E.G. Ng, L.E. Rippe, W.C. Saphir, F. Verdier, H.A. Walter, and K.A. Yelick, “Science-Driven Computing: NERSC’s Plan for 2006-2010,” LBNL-57582, 2005
E.W. Bethel, B.Hamann, J.C.Meza and H.Simon, NERSC "Visualization Greenbook" Future Visualization Needs of the DOE Computational Science Community Hosted at NERSC. LBNL-51699, November 2002
D.Bailey, M.Banda, C.Catlett, J.Hules, W.Johnston, W.Kramer, J.Leighton, R.Lusk, T.Morgan, C.W.McCurdy, J.C.Meza, H.Simon, and R.Stevens, Creating Science-Driven Computer Architecture: A New Path to Scientific Leadership. LBNL/PUB-5483, October 2002.
A.W. Marshall, J.C. Meza, and I. Olkin, Can Data Recognize Its Parent Distribution? Technical Report SAND99-8241, May 1999. To be published in Journal of Computational and Graphical Statistics, September 2001.
P.D. Hough and J.C. Meza, A Class of Trust Region Methods for Parallel Optimization. SIAM Journal of Optimization, Vol. 13, No. 1, pp. 64-282, 2002. Also available as Technical Report SAND98-8245, August 1998.
1990-2000
J.C. Meza, Surviving Graduate School. SACNAS Newsletter, November 1997.
J.C. Meza, C.D. Moen, and C.H. Tong, Simulation of Equipment Design Optimization in Microelectronics Manufacturing, Proceedings of the 30th Annual Simulation Symposium, Atlanta, Georgia, April 7-9, 1997.
J.C. Meza, T.D. Plantenga, and R.S. Judson, Novel Applications of Optimization to Molecule Design. IMA Series "Large Scale Optimization with Applications, Part III", Ed. L. Biegler, T. Coleman, A. Conn, and F. Santosa, Vol. 94, 1997, Springer.
J.C. Meza, C.D. Moen, T.D. Plantenga, P.A. Spence, C.H. Tong, B.A. Hendrickson, R.W. Leland, G.M. Reese, Parallel Optimization Methods for Agile Manufacturing. Technical Report SAND97-8275, August 1997.
C.D. Moen, P.A. Spence, J.C. Meza, T.D. Plantenga, Automatic Differentiation for Gradient-Based Optimization of Radiatively Heated Microelectronics Manufacturing Equipment. Proceedings of 6th AIAA/NASA/ISSMO Symposium on Multidisciplinary Analysis and Optimization, September 4-6, 1996, Bellevue, WA.
J.C. Meza and R.S. Tuminaro, A Multigrid Preconditioner for the Semiconductor Equations. SIAM J. Sci. Comput., Vol. 17, No.1, 118-132, 1996.
J.C. Meza, R.S. Judson, T.R. Faulkner, A.M. Treasurywala, A Comparison of a Direct Search Method and a Genetic Algorithm for Conformational Searching. J. Comp. Chem., Vol. 17, No. 9, 1142-1151, 1996.
V. Pereyra, M. Koshy, J.C. Meza, Asynchronous Global Optimization Techniques for Medium and Large Inversion Problems. Technical Report SAND95-8591, Sandia National Laboratories, 1995.
J.C. Meza, T.D. Plantenga, Optimal Control of a CVD Reactor for Prescribed Temperature Behavior. Technical Report SAND95-8224, Sandia National Laboratories, 1995.
C.D. Moen, P.A. Spence, J.C. Meza, Optimal Heat Transfer Design of Chemical Vapor Deposition Reactors. Technical Report SAND95-8223, Sandia National Laboratories, 1995.
J.C. Meza, A Modification to the GMRES Method for Ill-Conditioned Linear Systems. Technical Report SAND95-8220, Sandia National Laboratories, 1995.
J.C. Meza and M.L. Martinez, On the Use of Direct Search Methods for the Molecular Conformation Problem. J.Comp. Chem., Vol. 15, 627-632, 1994.
J.C. Meza, OPT++: An Object-Oriented Class Library for Nonlinear Optimization. Technical Report SAND94-8225, Sandia National Laboratories, 1994.
J.C. Meza and M.L. Martinez, Direct Search Method for the Molecular Conformation Problem. Abstract SAND93-8233, Sandia National Laboratories, 1993.
J.C. Meza and I. Olkin, Numerical Procedures for Estimating the Parameters in a Multivariate Homogeneous Correlation Model with Unequal Variances. Sankhya, Vol. 55, Part 3, 506-515, 1993.
J.C. Meza, M. Koshy, V. Pereyra, A Parallel Network Computer Approach for 3D Geophysical Modeling. Technical Report SAND92-8467, Sandia National Laboratories, 1992.
J.C. Meza, W.W. Symes, Conjugate Residual Methods for Almost Symmetric Linear Systems. Journal of Optimization Theory and its Applications, Vol. 72, No. 3, pp. 415-440, 1992.
J.C. Meza, W.W. Symes, Deflated Krylov subspace methods for nearly singular linear systems. Journal of Optimization Theory and its Applications, Vol. 72, No. 3, pp. 441-457, 1992.
R.S. Judson, M.E. Colvin, J.C. Meza, A. Huffer, D. Gutierrez, Do Intelligent Configuration Search Techniques Outperform Random Search for Large Molecules? International Journal of Quantum Chemistry Vol. 44, 277-290, 1992.
M. Koshy, J.C. Meza, V. Pereyra, Distributed Computing Applications in Forward and Inverse Geophysical Modeling. Presented at the Society of Exploration Geophysicists' 1991 Annual Meeting, November 10-14, Houston, Texas.
J.C. Meza and J.F. Grcar, DANCIR: A Three-Dimensional Steady-State Semiconductor Device Simulator. Technical Report SAND89-8266, Sandia National Laboratories, 1990.
R.E. Cline, J.C. Meza, B.M. Boghosian, and B. Walker, Towards the development of engineering production codes for the Connection Machine. Proceedings of the Fourth Conference on Hypercubes, Concurrent Computers and Applications, March 6-8, 1989, Monterey, California.
J.C. Meza, W.W. Symes, Domain decomposition algorithms for linear hyperbolic equations. Technical Report 87-20, Rice University, 1987.
L.K. Chen, T.K. Eccles, J.C. Meza, G.O. Morrell, A.H. Sherman, W.J. Silliman. An Effective Methodology for PDE Software Development. In PDE Software: Modules, Interface and Systems, edited by B. Engquist and T. Smedsaas, Elsevier Science Publishing, New York, 1984.