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You can also view the publications below sorted by first author.
2006
LBNL/PUB-964. A. Shoshani (2006). The Scientific Data Management Center. http://www-library.lbl.gov/docs/PUB/964/PDF/PUB-964.pdf
LBNL-61114. E. Pourabbas and A. Shoshani (2006). Efficient Estimation of Joint Queries from Multiple OLAP Databases. ACM Transactions on Database Systems.
LBNL-60645. Z. Bai and C. Yang (2006). From Self-consistency to SOAR: Solving Large-scale Nonlinear Eigenvalue Problem. SIAM News (April).
LBNL-60478. E. W. Bethel, C. Johnson, C. Hansen, S. Parker, A. Sanderson, C. Silva, X. Tricoche, V. Pascucci, H. Childs, J. Cohen, M. Duchaineau, D. Laney, P. Lindstrom, S. Ahern, J. Meredith, G. Ostrouchov, K. Joy, and B. Hamann (2006). Meet the Proposed Visualization and Analytics Center for Enabling Technologies. http://www-library.lbl.gov/docs/LBNL/604/78/PDF/LBNL-60478_Poster.pdf
LBNL-60413. E. W. Bethel, C. Johnson, C. Hansen, S. Parker, A. Sanderson, C. Silva, X. Tricoche, V. Pascucci, H. Childs, J. Cohen, M. Duchaineau, D. Laney, P. Lindstrom, S. Ahern, J. Meredith, G. Ostrouchov, K. Joy, and B. Hamann (2006). VACET: Proposed SciDAC2 Visualization and Analytics Center for Enabling Technologies. In SciDAC 2006 Conference, edited by unknown, Institute of Physics Publishing, Denver, CO, unknown.
LBNL-60384. L. Grigori and X. S. Li (2006). Towards an Accurate Performance Modeling of Parallel Sparse Factorization. Applicable Algebra in Engineering, Communication, and Computing.
LBNL-60286. M. Sullivan, D. A. Howell, K. Perrett, P. E. Nugent, P. Astier, E. Aubourg, D. Balam, S. Basa, R. G. Carlberg, A. Conley, S. Fabbro, D. Fouchez, J. Guy, I. Hook, H. Lafoux, J. D. Neill, R. Pain, N. Palanque-Delabrouille, C. J. Pritchet, N. Regnault, J. Rich, R. Taillet, G. Aldering, S. Baumont, J. Bronder, M. Filiol, R. A. Knop, S. Perlmutter, and C. Tao (2006). Photometric Selection of High-Redshift Type Ia Supernova Candidates. The Astronomical Journal 131 (2), 960-972.
LBNL-60275. G. I. Barenblatt, M. Bertsch, and L. Giacomelli (2006). Stead and quasi-steady thin viscous flows near the edge of a solid surface. to be submitted for publication.
LBNL-60272. U. Adiga, R. Malladi, R. Gonzalez, and C. Ortiz de Solorzano (2006). A robust methodology for the analysis of multi-spectral images of breast cancer tissue blocks. to be submitted for publication.
LBNL-60147. C. Voemel, S. Tomov, L.-W. Wang, O. Marques, and J. Dongarra (2006). The use of bulk states to accelerate the band edge state calculation of a semiconductor quantum dot. Journal of Computational Physics.
LBNL-60060. S. Kamil, A. Pinar, D. Gunter, M. Lijewski, L. Oliker, J. Shalf, and D. Skinner (2006). Reconfigurable Hybrid Interconnection for \\ Static and Dynamic Scientific Applications. In International Conference for High Performance Computing, Networking, Storage and Analysis, Tampa, FL. http://www-library.lbl.gov/docs/LBNL/600/60/PDF/LBNL-60060.pdf
LBNL-60051. V. M. Markowitz, F. Korzeniewski, K. Palaniappan, E. Szeto, N. Ivanova, N. Kyrpides, and P. Hugenholtz (2006). An Experimental Metagenome Data Management and Analysis System. In ISMB 2006, Fortaleza, Brazil. http://www-library.lbl.gov/docs/LBNL/600/51/PDF/LBNL-60051.pdf
LBNL-59983. B. E. Bargmeyer (2006). Common sense, common logic. ISO Focus 3 (3), 24-26.
LBNL-59974. Z. Zhao, L.-W. Wang, and J. Meza (2006). Motif based Hessian matrix for ab initio geometry optimization of nanostructures. Rapid communication of Physical Review B.
LBNL-59952. K. Stockinger and K. Wu (2006). Bitmap Indices for Data Warehouses. In Data Warehouses and OLAP: Concepts, Architectures and Solutions, edited by C. K. R. Wrembel, Idea Group, Inc., Vol., p. http://www-library.lbl.gov/docs/LBNL/599/52/PDF/LBNL-59952.pdf
LBNL-59949. D. Rotem, K. Stockinger, and K. Wu (2006). Minimizing I/O Costs of Multi-Dimensional Queries with Bitmap Indices. In International Conference on Scientific and Statistical Database Management (SSDBM 2006), Vienna, Austria. http://www-library.lbl.gov/docs/LBNL/599/49/PDF/LBNL-59949.pdf
LBNL-59934. S. A. Williams, A. S. Almgren, and E. G. Puckett (2006). On Using a Fast Multipole Method-based Poisson Solver in an Approximate Projection Method. http://www-library.lbl.gov/docs/LBNL/599/34/PDF/LBNL-59934.pdf
LBNL-59881. P. Nugent, M. Sullivan, R. Ellis, A. Gal-Yam, D. Leonard, D. Howell, P. Astier, R. Carlberg, A. Conley, S. Fabbro, F. D., J. Neill, R. Pain, K. Perrett, and C. Pritchet (2006). Towards a Cosmological Hubble Diagram for Type II-P Supernovae. Astrophysical Journal.
LBNL-59602. L. Gosink, J. Shalf, K. Stockinger, K. Wu, and W. Bethel (2006). HDF5-FastQuery: Accelerating Complex Queries on HDF Datasets using Fast Bitmap Indices. In International Conference on Scientific and Statistical Database Management (SSDBM 2006), Vienna, Austria. http://www-library.lbl.gov/docs/LBNL/596/02/PDF/LBNL-59602.pdf
LBNL-59490. P. Stinis and A. J. Chorin (2006). Numerical scaling analysis of the small-scale structure in turbulence. to be submitted for publication.
LBNL-59437. K. Stockinger, D. Rotem, A. Shoshani, and K. Wu (2006). Analyzing Enron Data: Bitmap Indexing Outperforms MySQL Queries by Several Orders of Magnitude. http://www-library.lbl.gov/docs/LBNL/594/37/PDF/LBNL-59437.pdf
LBNL-59340. J. Carter and L. Oliker (2006). Performance Evaluation of Lattice-Boltzmann Magnetohydrodynamics Simulations on Modern Parallel Vector Systems. In 2nd Teraflop Workshop, edited by M. Resch, Springer, Stuttgart, Germany. http://www-library.lbl.gov/docs/LBNL/593/40/PDF/LBNL-59340.pdf
LBNL-59272. B. Lee and L.-W. Wang (2006). Electronic Structure of zinc-blende AlGaN; Screened-Exchange Study. Physical Review B.
LBNL-58944. O. Marques, J. Riedy, and C. Voemel (2006). Benefits of IEEE-754 features in modern symmetric tridiagonal eigensolvers. SIAM Journal on Scientific Computing (SISC).
LBNL-58673 Pt.II. A. S. Almgren, J. B. Bell, C. A. Rendleman, and M. Zingale (2006). Low Mach Number Modeling of Type Ia Supernovae. II. Energy Evolution. Astrophysical Journal.
LBNL-57438. W. Gao, X. S. Li, C. Yang, and Z. Bai (2006). An Implementation and Evaluation of the AMLS Method for Sparse Eigenvalue Problems. ACM Trans. Math. Software.
2005
LBNL/PUB-3186. G. C. Smith III (2005). OS X Security Set-Up and User's Guide. http://www-library.lbl.gov/docs/PUB/3186/PDF/PUB-3186.pdf | http://www-library.lbl.gov/docs/PUB/3186/SRC/PUB-3186.doc
LBNL/PUB-947. M. A. Richards and H. D. Simon (2005). Enabling Computational Science and Engineering at Berkeley.
LBNL-60029. A. J. Chorin and P. Stinis (2005). Problem reduction, renormalization and memory. Communications and Applied Mathematicsl Computing Sciences 1, 1-27.
LBNL-60019. A. J. Chorin and P. Krause (2005). Dimensional reduction for a Bayesian filter. Proceedings of the National Academy of Sciences 101 (42), 15013-15017.
LBNL-59622. C. Ding, X. He, H. D. Simon, and R. Jin (2005). On the Equivalence of Nonnegative Matrix Factorization and K-means - Spectral Clustering. Journal of Machine Learning Research.
LBNL-59602. L. Gosink, J. Shalf, K. Stockinger, K. Wu, and W. Bethel (2005). HDF5-FastQuery: Accelerating Complex Queries on HDF Datasets Using Fast Bitmap Indices. In 2005 HDF Workshop, San Francisco, CA. http://www-library.lbl.gov/docs/LBNL/596/02/PDF/LBNL-59602_Ext_Abs.pdf
LBNL-59231. D. O. Demchenko and L.-W. Wang (2005). Optical transitions and nature of Stokes shift in spherical CdS quantum dots. Physical Review B.
LBNL-59229. E. Pourabbas and A. Shoshani (2005). The Composite OLAP-Object Data Model. http://www-library.lbl.gov/docs/LBNL/592/29/PDF/LBNL-59229.pdf
LBNL-59208. U. Consortium (2005). UPC Language Specifications V1.2. http://www-library.lbl.gov/docs/LBNL/592/08/PDF/LBNL-59208.pdf
LBNL-59207. C. Bell, D. Bonachea, R. Nishtala, and K. Yelick (2005). Optimizing Bandwidth Limited Problems Using One-Sided Communication and Overlap. In IPDPS 2006, Rhodes Island, Greece. http://www-library.lbl.gov/docs/LBNL/592/07/PDF/LBNL-59207.pdf
LBNL-59102. K. Wu, E. Otoo, and K. Suzuki (2005). Two Strategies to Speed up Connected Component Labeling Algorithms. IEEE Transactions on Pattern Analysis and Machine Intelligence.
LBNL-59071. S. Williams, J. Shalf, L. Oliker, P. Husbands, S. Kamil, and K. Yelick (2005). The Potential of the Cell Processor for Scientific Computing. In International Parallel & Distributed Processing Symposium - 2006, Rhodes Island, Greece. http://www-library.lbl.gov/docs/LBNL/590/71/PDF/LBNL-59071.pdf
LBNL-59060. D. H. Bailey and J. M. Borwein (2005). Future Prospects for Computer-Assisted Mathematics. Notices of the Canadian Mathematical Society 37 (8), 2-6. http://www-library.lbl.gov/docs/LBNL/590/60/PDF/LBNL-59060.pdf
LBNL-59031. L. Grigori, J. W. Demmel, and X. S. Li (2005). Parallel Symbolic Factorization for Sparse LU with Static Pivoting. SIAM J. Scientific Computing.
LBNL-58949. Y. Zhang, X. S. Li, and O. Marques (2005). Towards an Automatic and Application-Based Eigensolver Selection. In LACSI Symposium 2005, Santa Fe, NM. http://www-library.lbl.gov/docs/LBNL/589/49/PDF/LBNL-58949.pdf
LBNL-58914. K. Yelick, S. Kamil, W. T. Kramer, L. Oliker, J. Shalf, H. Shan, and E. Strohmaier (2005). Science Driven Supercomputing Architectures: Analyzing Architectural Bottlenecks with Applications and Benchmark Probes. http://www-library.lbl.gov/docs/LBNL/589/14/PDF/LBNL-58914.pdf
LBNL-58874. G. I. Barenblatt (2005). Applied mechanics: An age-old science perpetually in rebirth. In ASME International Mechanical Engineering Congress, Orlando, FL.
LBNL-58810. Y.-H. Tseng, D. E. Dietrich, and J. H. Ferziger (2005). Regional circulation of the Monterey Bay region: Hydrostatic versus nonhydrostatic modeling. Journal of Geophysical Research - Oceans 110 (C9), C09015.
LBNL-58786. D. F. Martin, P. Colella, M. Anghel, and F. J. Alexander (2005). Adaptive mesh refinement for multiscale nonequilibrium physics. Computing in Science and Engineering 7 (3), 24-31.
LBNL-58768. K. Stockinger, K. Wu, S. Campbell, S. Lau, M. Fisk, E. Gavrilov, A. Kent, C. E. Davis, R. Olinger, R. Young, J. Prewett, P. Weber, T. P. Caudell, E. W. Bethel, and S. Smith (2005). Network Traffic Analysis With Query Driven VisualizationSC 2005 HPC Analytics Results. In Supercomputing 2005, ACM - Association for Computing Machinery, Seattle, Washington. http://www-library.lbl.gov/docs/LBNL/587/68/PDF/LBNL-58768.pdf
LBNL-58765. D. M. Summers (2005). A three-dimensional multiscale particle dispersion satisfying a similarity condition.
LBNL-58755. D. Rotem, K. Stockinger, and K. Wu (2005). Towards Optimal Multi-Dimensional Query Processing with Bitmap Indices. http://www-library.lbl.gov/docs/LBNL/587/55/PDF/LBNL-58755.pdf
LBNL-58754. D. Rotem, K. Stockinger, and K. Wu (2005). Optimizing Candidate Check Costs for Bitmap Indices. In The ACM Conference on Information and Knowledge Management (CIKM), Bremen, Germany. http://www-library.lbl.gov/docs/LBNL/587/54/PDF/LBNL-58754.pdf
LBNL-58751. J. B. Bell, M. S. Day, J. F. Grcar, and M. J. Lijewski (2005). Active Control for Statistically Stationary Premixed Flame Simulations. Communications in Applied Mathematics and Computational Science.
LBNL-58710. L. A. Drummond and O. A. Marques (2005). An Overview of the Advanced CompuTational Software (ACTS) Collection. ACM Transactions on Mathematical Software 31 (3), 282-301. http://www-library.lbl.gov/docs/LBNL/587/10/PDF/LBNL-58710.pdf
LBNL-58707. J. B. Bell, M. Day, V. Beckner, C. Rendleman, A. L. Kuhl, and P. Neuwald (2005). Numerical Simulation of Shock-Dispersed Fuel Charges. In HPCMP Users Group Conference 2005, IEEE, Nashville, TN. http://www-library.lbl.gov/docs/LBNL/587/07/PDF/LBNL-58707.pdf
LBNL-58673. A. S. Almgren, J. B. Bell, C. A. Rendleman, and M. Zingale (2005). Low Mach Number Modeling of Type Ia Supernovae. Astrophysical Journal 637, 922-36. http://www-library.lbl.gov/docs/LBNL/586/73/PDF/LBNL-58673.pdf
LBNL-58658. A. Pinar and B. Hendrickson (2005). Combinatorial Parallel and Scientific Computing. In Parallel Processing for Scientific Computing, edited by M. H. Padma Raghavan, Horst Simon, SIAM, Vol., p. http://www-library.lbl.gov/docs/LBNL/586/58/PDF/LBNL-58658.pdf | http://www-library.lbl.gov/docs/LBNL/586/58/PS/LBNL-58658.ps
LBNL-58654. X. S. Li, W. Gao, P. J. R. Husbands, C. Yang, and E. G. Ng (2005). The Roles of Sparse Direct Methods in Large-scale Simulations. In SciDAC 2005, San Francisco, CA. http://www-library.lbl.gov/docs/LBNL/586/54/PDF/LBNL-58654.pdf
LBNL-58623. B. D. Santer, T. M. L. Wigley, C. Mears, F. J. Wentz, S. A. Klein, D. J. Seidel, K. E. Taylor, P. W. Thorne, M. F. Wehner, P. J. Gleckler, J. S. Boyle, W. D. Collins, K. W. Dixon, C. Doutriaux, M. Free, Q. Fu, J. E. Hansen, G. S. Jones, R. Ruedy, T. R. Karl, J. R. Lanzante, G. A. Meehl, V. Ramaswamy, G. Russell, and G. A. Schmidt (2005). Amplification of surface temperature trends and variability in the tropical atmosphere. Science 309 (5740), 1551-1556. http://www-library.lbl.gov/docs/LBNL/586/23/PDF/LBNL-58623.pdf
LBNL-58622. M. Wehner (2005). The impact of SciDAC on US climate change research and the IPCC AR4. In SciDAC (Scientific Discovery through Advanced Computing Program), San Francisco, CA, USA. http://www-library.lbl.gov/docs/LBNL/586/22/PDF/LBNL-58622.pdf
LBNL-58531. E. Strohmaier, H. W. Meuer, J. Dongarra, and H. D. Simon (2005). TOP500 Supercomputers for June 2005. http://www-library.lbl.gov/docs/LBNL/585/31/PDF/LBNL-58531.pdf
LBNL-58515. F. Bartolome, J. Herrero-Albillos, L. Garcia, A. Young, T. Funk, and E. Arenholz (2005). Antiferromagnetic arrangement in paramagnetic ErCo2. In 50th Annual Conference on Magnetism and Magnetic Materials, San Jose, California, USA. http://www-library.lbl.gov/docs/LBNL/585/15/PDF/LBNL-58515_Abs.pdf
LBNL-58443. E. Strohmaier, D. J. J., H. W. Meuer, and H. D. Simon (2005). Recent Trends in the Marketplace of High Performance Computing. Parallel Computing 31, 261-273. http://www-library.lbl.gov/docs/LBNL/584/43/PDF/LBNL-58443.pdf
LBNL-58442. E. Strohmaier (2005). 20 Years Supercomputer Market Analysis. In International Supercomputing Conference, Heidelberg, Germany. http://www-library.lbl.gov/docs/LBNL/584/42/PDF/LBNL-58442.pdf
LBNL-58441. J. Weinberg, A. Snavely, M. O. McCracken, and E. Strohmaier (2005). Quantifying Locality in the Memory Access Patterns of HPC Applications. In SC 2005, Seattle, WA. http://www-library.lbl.gov/docs/LBNL/584/41/PDF/LBNL-58441.pdf
LBNL-58426. K. Stockinger, K. Wu, R. Brun, and P. Canal (2005). Bitmap Indices for Fast End-User Physics Analysis in ROOT. Nuclear Instruments and Methods in Physics Research Section A: Accelerators, Spectrometers, Detectors and Associated Equipment.
LBNL-58413. P. Worley, P. Roth, J. Candy, H. Shan, G. Mahinthakumar, S. Sreepathi, L. Carrington, T. Kaiser, A. Snavely, D. Reed, Y. Zhang, K. Huck, A. Malony, S. Shende, S. Moore, and F. Wolf (2005). Performance Analysis of GYRO: A Tool Evaluation. In SciDAC Scientific Discovery through Advanced Computing, 2005, San Francisco, CA. http://www-library.lbl.gov/docs/LBNL/584/13/PDF/LBNL-58413.pdf
LBNL-58411. H. Shan and E. Strohmaier (2005). MPI, SHMEM, and UPC Performance on the Cray X1 - A Case Study using APEX-Map. In Cray User Group Conference 2005, Albuquerque, NM. http://www-library.lbl.gov/docs/LBNL/584/11/PDF/LBNL-58411.pdf
LBNL-58410. E. Strohmaier and H. Shan (2005). Apex-Map: A Synthetic Scalable Benchmark Probe to Explore Data Access Performance on Highly Parallel Systems. In EuroPar 2005, Lisbon, Portugal. http://www-library.lbl.gov/docs/LBNL/584/10/PDF/LBNL-58410.pdf
LBNL-58409. E. Strohmaier and H. Shan (2005). Apex-Map: A Global Data Access Benchmark to Analyze HPC Systems and Parallel Programming Paradigms. In SC 05, Seattle, WA. http://www-library.lbl.gov/docs/LBNL/584/09/PDF/LBNL-58409.pdf
LBNL-58387. A. P. Craig, R. L. Jacob, B. Kauffman, T. Bettge, J. Larson, E. Ong, C. Ding, and Y. He (2005). Cpl6: The New Extensible, High-Performance Parallel Coupler for the Community Climate System Model. International Journal of High Performance Computing Applications 19 (3), 309-27. http://www-library.lbl.gov/docs/LBNL/583/87/PDF/LBNL-58387.pdf
LBNL-58385. Y. He and C. H. Q. Ding (2005). Coupling Multi-Component Models with MPH on Distributed Memory Computer Architectures. International Journal of High Performance Computing Applications.
LBNL-58382. W. Chen, C. Iancu, and K. Yelick (2005). Communication Optimizations for Fine-Grained UPC Applications. In The Fourteenth International Conference on Parallel Architectures and Compilation Techniques, Saint Louis, MO. http://www-library.lbl.gov/docs/LBNL/583/82/PDF/LBNL-58382.pdf
LBNL-58381. C. Iancu, H. Parry, and P. Hargrove (2005). Hunting the Overlap. In The Fourteenth International Conference on Parallel Architectures and Compilation Techniques, Saint Louis, MO. http://www-library.lbl.gov/docs/LBNL/583/81/PDF/LBNL-58381.pdf
LBNL-58339. C. Yang (2005). Solving Large-scale Eigenvalue Problems in SciDAC Applications. In SciDAC 2005, edited by T. Mezzacappa, Institute of Physics Publishing, San Francisco, CA. http://www-library.lbl.gov/docs/LBNL/583/39/PDF/LBNL-58339.pdf
LBNL-58336. P. Nugent (2005). UV Spectroscopy of Type Ia Supernovae at Low- and High-Redshift. In 1604-2004 Supernovae as Cosmological Lighthouses, edited by T. e. al., ASP, Padua, Italy. http://www-library.lbl.gov/docs/LBNL/583/36/PDF/LBNL-58336.pdf
LBNL-58330. S. Nobili, R. Amanullah, G. Garavini, A. Goobar, C. Lidman, V. Stanishev, G. Aldering, P. Antilogus, P. Astier, M. S. Burns, A. Conley, S. E. Deustua, R. Ellis, S. Fabbro, V. Fadeyev, G. Folatelli, R. Gibbons, G. Goldhaber, D. E. Groom, I. Hook, D. A. Howell, A. G. Kim, R. A. Knop, P. E. Nugent, R. Pain, S. Perlmutter, R. Quimby, J. Raux, N. Regnault, P. Ruiz-Lapuente, G. Sainton, K. Schahmaneche, E. Smith, A. L. Spadafora, R. C. Thomas, and L. Wang (2005). Restframe I-band Hubble diagram for type Ia supernovae up to redshift z ~ 0.5. Astronomy and Astrophysics 437, 789-804. http://www-library.lbl.gov/docs/LBNL/583/30/PDF/LBNL-58330.pdf
LBNL-58295. A. Shoshani, A. Sim, and K. Stockinger (2005). RRS: Replica Registration Service for Data Grids. In VLDB Workshop on Data Management in Grids, Trondheim, Norway. http://www-library.lbl.gov/docs/LBNL/582/95/PDF/LBNL-58295.pdf
LBNL-58253. S. W. Williams, J. Shalf, L. Oliker, P. Husbands, and K. Yelick (2005). Dense and Sparse Matrix Operations on the Cell Processor. In 18th International Conference on Parallel and Distributed Computing Systems, Las Vegas, NV. http://www-library.lbl.gov/docs/LBNL/582/53/PDF/LBNL-58253.pdf
LBNL-58171. E. W. Bethel and J. M. Shalf (2005). Algorithms, Frameworks and Toolsets for High Performance, Remote and Distributed Visualization. http://www-library.lbl.gov/docs/LBNL/581/71/PDF/LBNL-58171.pdf
LBNL-58169. C. Crawford, O. Kreylos, B. Hamann, and S. Crivelli (2005). Visualization of Force Fields in Protein Structure Prediction. In IEEE Visualization 2005, Minneapolis, NM. http://www-library.lbl.gov/docs/LBNL/581/69/PDF/LBNL-58169.pdf
LBNL-58004. J. Carter, L. Oliker, and J. Shalf (2005). Performance Evaluation of Plasma Physics and Astrophysics Applications on Modern Parallel Vector Systems. In VECPAR'06 7th International Conference on High Performance Computing for Computational Science, edited by J. D. M. Daydé, V. Hernandez and J.M.L.M. Palma, Springer, Rio de Janeiro, Brazil.
LBNL-58002. J. Carter, M. Soe, L. Oliker, Y. Tsuda, G. Vahala, L. Vahala, and A. Macnab (2005). Magnetohydrodynamic Turbulence Simulations on the Earth Simulator Using the Lattice Boltzmann Method. In Conference on High Performance Computing, Networking and Storage, edited by B. B. Jeff Kuehn, IEEE Computer Society Press, Seattle, WA. http://www-library.lbl.gov/docs/LBNL/580/02/PDF/LBNL-58002.pdf | http://www-library.lbl.gov/docs/LBNL/580/02/SRC/LBNL-58002.doc
LBNL-58001. J. Borrill, J. Carter, L. Oliker, D. Skinner, and R. Biswas (2005). Integrated Performance Monitoring of a Cosmology Application on Leading HEC Platforms. In the 2005 International Conference on Parallel Processing (ICPP-05), edited by L. N. Olav Lynse, IEEE Computer Society, Univ. of Oslo, Norway, 00. http://www-library.lbl.gov/docs/LBNL/580/01/PDF/LBNL-58001.pdf
LBNL-57994. V. Donde, V. Lopez, B. Lesieutre, A. Pinar, C. Yang, and J. Meza (2005). Identification of Severe Multiple Contingencies in Electric Power Networks. In North American Power Symposium, Ames, IA.
LBNL-57982. K. Wu (2005). FastBit: An Efficient Indexing Technology For Accelerating Data-Intensive Science. In SciDAC 2005, San Francisco, CA. http://www-library.lbl.gov/docs/LBNL/579/82/PDF/LBNL-57982.pdf
LBNL-57950. J.-W. Luo, S.-S. Li, J.-B. Xia, and L.-W. Wang (2005). Photoluminescence pressure coefficients of InAs/GaAs quantum dots. Physical Review B 71, 245315(1-5).
LBNL-57949. L. Manna, L. W. Wang, R. Cingolani, and A. P. Alivisatos (2005). First-principles modeling of unpassivated and surfactant-passivated bulk facets of wurtzite CdSe: A Model System for Studying the Anisotropic Growth of CdSe Nanocrystals. Journal of Physical Chemistry B 109 (13), 6183-92.
LBNL-57948. X. Cartoixa and L.-W. Wang (2005). Microscopic dielectric response functions in semiconductor quantum dots. Physical Review Letter 94, 236804(1-4).
LBNL-57947. J. W. Luo, S. S. Li, J. B. Xia, and L.-W. Wang (2005). A comparative study for colloidal quantum dot calculations. Applied Physics Letter.
LBNL-57945. J. Li and L.-W. Wang (2005). Band-structure-corrected local density approximation study of semiconductor quantum dots and wires. Physical Review B 72 (12), 125325(1-15).
LBNL-57944. B. Lee and L.-W. Wang (2005). Electronic structure of Calcium hexaborides. Applied Physics Letters 87, 262509. http://www-library.lbl.gov/docs/LBNL/579/44/PDF/LBNL-57944.pdf | http://www-library.lbl.gov/docs/LBNL/579/44/PS/LBNL-57944.ps
LBNL-57904. G. I. Barenblatt and A. J. Chorin (2005). A mathematical model for the scaling of turbulence. Proceedings of the National Academy of Sciences 101 (42), 15023-15026.
LBNL-57860. R. J. Foley, A. V. Filippenko, D. C. Leonard, A. G. Riess, P. Nugent, and S. Perlmutter (2005). A Definitive Measurement of Time Dilation in the Spectral Evolution of the Moderate-Redshift Type Ia Supernova 1997ex. The Astrophysical Journal 626, 11-14.
LBNL-57842. G. I. Barenblatt, A. J. Chorin, and V. M. Prostokishin (2005). A note concerning the Lighthill "sandwich model" of tropical cyclones. In ASME International Mechanical Engineering Congress, Orlando, FL.
LBNL-57677. K. Wu, J. Gu, J. Lauret, A. M. Poskanzer, A. Shoshani, A. Sim, and W.-M. Zhang (2005). Grid Collector: Facilitating Efficient Selective Access from Data Grids. In International Supercomputer Conference, Heidelberg, Germany. http://www-library.lbl.gov/docs/LBNL/576/77/PDF/LBNL-57677.pdf
LBNL-57621. D. Rotem, K. Stockinger, and K. Wu (2005). Optimizing I/O Costs of Multi-Dimensional Queries using Bitmap Indices. In International Conference on Database and Expert Systems Applications (DEXA), Copenhagen, Denmark. http://www-library.lbl.gov/docs/LBNL/576/21/PDF/LBNL-57621.pdf
LBNL-57607. A. Adelmann, R. D. Ryne, C. Siegerist, and J. M. Shalf (2005). H5Part: A Portable High Performance Parallel Data Interface for Particle Simulations. In Particle Accelerator Conference, edited by C. Horak, IEEE, Knoxville, TN. http://www-library.lbl.gov/docs/LBNL/576/07/PDF/LBNL-57607_Ext_Abs.pdf
LBNL-57603. A. Adelmann, R. D. Ryne, J. M. Shalf, and C. Siegerist (2005). From Visualisation to Data Mining with Large Data Sets. In Particle Accelerator Conference 2005, Knoxville, Tennessee. http://www-library.lbl.gov/docs/LBNL/576/03/PDF/LBNL-57603.pdf
LBNL-57581. D. H. Bailey, J. M. Borwein, and D. M. Bradley (2005). Experimental Determination of Apery-Like Identities for Zeta(2n+2). Experimental Mathematics.
LBNL-57528. J. Chen, I. Yoon, and E. W. Bethel (2005). Interactive, Internet Delivery of Scientific Visualization via Structured, Prerendered Multiresolution Imagery. In IEEE Visualization 2005, Minneapolis, MN. http://www-library.lbl.gov/docs/LBNL/575/28/PDF/LBNL-57528.pdf
LBNL-57527. K. Wu and E. Otoo (2005). A Simpler Proof Of The Average Case Complexity Of Union-Find With Path Compression. http://www-library.lbl.gov/docs/LBNL/575/27/PDF/LBNL-57527.pdf
LBNL-57511. K. Stockinger, J. Shalf, K. Wu, and E. W. Bethel (2005). Query-Driven Visualization of Large Data Sets. In IEEE Visualization, Minneapolis, MN. http://www-library.lbl.gov/docs/LBNL/575/11/PDF/LBNL-57511.pdf
LBNL-57500. J. A. Greenough, B. R. de Supinski, R. K. Yates, C. A. Rendleman, D. Skinner, V. Beckner, M. Lijewski, J. Bell, and J. C. Sexton (2005). Performance of a Block Structured, Hierarchical Adaptive Mesh Refinement Code on the 64k Node IBM BlueGene/L Computer. In SC|05 International Conference for High Performance Computing Networking and Storage, Seattle, WA. http://www-library.lbl.gov/docs/LBNL/575/00/PDF/LBNL-57500.pdf
LBNL-57434. C. Yang, J. Meza, and L.-W. Wang (2005). A Constrained Optimization Algorithm for Total Energy Minimization in Electronic Structure Calculation. Journal of Computational Physics.
LBNL-57418. B. Xue, N. Max, and C. Siegerist (2005). Anisotropic Ellipsoidal Smoothing of Volume Data. In IEEE Visualization 2005, Minneapolis, MN. http://www-library.lbl.gov/docs/LBNL/574/18/PDF/LBNL-57418.pdf
LBNL-57161. C. Gatti-Bono and C. Phillip (2005). A Filtering Method For Gravitationally Stratified Flows. Monthly Weather Review.
LBNL-57158. C. Gatti-Bono and P. Colella (2005). An Anelastic Allspeed Projection Method for Gravitationally Stratified Flows. Journal of Computational Physics.
LBNL-57156. P. Schwartz, D. Adalsteinsson, P. Colella, A. P. Arkin, and M. Onsum (2005). Numerical Computation of Diffusion on a Surface. Proceedings of the National Academy of Science 102 (32), 11151-56. http://www-library.lbl.gov/docs/LBNL/571/56/PDF/LBNL-57156.pdf
LBNL-57134. V. M. Markowitz, F. Korzeniewski, K. Palaniappan, and E. Szeto (2005). The Integrated Microbial Genomes (IMG) System: A Case Study in Biological Data Management. In VLDB 2005, Trondheim, Norway.
LBNL-57099. L. A. Drummond (2005). The Forthcoming Petascale Systems Era: Got Tools? In SALISHAN CONFERENCE ON HIGH SPEED COMPUTING, Salishan, OR. http://www-library.lbl.gov/docs/LBNL/570/99/PDF/LBNL-57099_Abs.pdf
LBNL-57023. K. Stockinger, J. Shalf, W. Bethel, and K. Wu (2005). DEX: Increasing the Capability of Scientific Data Analysis Pipelines by Using Efficient Bitmap Indices to Accelerate Scientific Visualization. In International conference on Scientific and Statistical Database Management (SSDBM 2005), Santa Barbara, California. http://www-library.lbl.gov/docs/LBNL/570/23/PDF/LBNL-57023_Conf.pdf
LBNL-57023. K. Stockinger, J. Shalf, W. Bethel, and K. Wu (2005). DEX: Increasing the Capability of Scientific Data Analysis Pipelines by Using Efficient Bitmap Indices to Accelerate Scientific Visualization. http://www-library.lbl.gov/docs/LBNL/570/23/PDF/LBNL-57023.pdf
LBNL-56992. P. Colella and T. Wen (2005). Adaptive mesh refinement in titanium. In 19th International Parallel and Distributed Processing Symposium, IEEE, Denver, CO. http://www-library.lbl.gov/docs/LBNL/569/92/PDF/LBNL-56992.pdf
LBNL-56966. M. Zingale, S. E. Woosley, C. A. Rendleman, M. S. Day, and J. B. Bell (2005). Three-dimensional numerical simulations of Rayleigh-Taylor unstable flames in type Ia supernovae. Astrophysical Journal 632 (2pt1), 1021-34. http://www-library.lbl.gov/docs/LBNL/569/66/PDF/LBNL-56966.pdf
LBNL-56965. J. Demmel, Y. Hida, W. Kahan, X. S. Li, S. Mukherjee, and E. J. Riedy (2005). Error bounds from extra precise iterative refinement. ACM Trans. on Mathematical Software.
LBNL-56885. R. Kupferman (2005). On the linear stability of plane couette flow for an Oldroyd-B fluid and its numerical approximation. Journal of Non-Newtonian Fluid Mechanics 127, 169-190.
LBNL-56882. M. S. Day, J. B. Bell, J. F. Grcar, and V. E. Beckner (2005). Numerical control of 3d turbulent premixed flame simulations. In 20th International Colloquium on the Dynamics of Explosions and Reactive Systems, McGill University, Montreal, Canada. http://www-library.lbl.gov/docs/LBNL/568/82/PDF/LBNL-56882_Ext_Abs.pdf
LBNL-56876. A. Pinar and C. Aykanat (2005). One-dimensional partitioning for heterogeneous systems. Journal of Parallel and Distributed Systems.
LBNL-56864. K. Wu, E. Otoo, and A. Shoshani (2005). Optimizing connected component labeling algorithms. In SPIE Medical Imaging 2005, edited by J. W. Doug Milam, Jonathan McConnell, Kerry Garvin, Lisa Polinder. Matt Novak, Dara Burrows, SPIE, San Diego, California, USA.
LBNL-56861. P. Amestoy, X. S. Li, and S. Pralet (2005). Unsymmetric ordering using a constrained Markowitz scheme. SIAM J. Matrix Analysis and Applications.
LBNL-54498. A. Pinar and V. Vassilevska (2005). Finding Nonoverlapping Substructures of a Sparse Matrix. Electric Transactions Numerical Analysis 21, 107-124. http://www-library.lbl.gov/docs/LBNL/544/98/PDF/LBNL-54498.pdf | http://www-library.lbl.gov/docs/LBNL/544/98/PS/LBNL-54498.ps
LBNL-54484. P. Stinis (2005). A comparative study of two stochastic mode reduction methods. Physica D 213 (2), 197-213.
LBNL-54479. T. Deschamps, R. Malladi, and I. Ravve (2005). Fast evolution of image manifolds and application to filtering and segmentation in 3D medical images. IEEE Transactions on Visualization and Computer Graphics 10, 525-535.
LBNL-54477. U. Adiga, A. Idica, R. F. Gonzalez, and C. Ortiz de Solorzano (2005). An efficient approach to segmentation of cell-nuclei in tissue images: application to breast tissue blocks.
LBNL-54198. J. B. Bell, M. S. Day, I. G. Shepherd, M. Johnson, R. K. Cheng, J. F. Grcar, V. E. Beckner, and M. J. Lijewski (2005). Numerical simulation of a laboratory-scale turbulent V-flame. Proceedings of the National Academy of Sciences 102 (29), 10006-11. http://www-library.lbl.gov/docs/LBNL/541/98/PDF/LBNL-54198_Journal.pdf
LBNL-52482. A. Pinar, E. Chow, and A. Pothen (2005). Combinatorial Algorithms for Computing Column Space Bases That Have Sparse Inverses. Electronic Transactions on Numerical Algorithms.
LBNL-52000. J.-D. Yu, S. Sakai, and J. Sethian (2005). A coupled quadrilateral grid level set projection method applied to ink jet simulation. Journal of Computational Physics 205 (1), 227-51.
LBNL-51996. P. Stinis (2005). A Hybrid Method for the Inviscid Burgers Equation. Discrete and Continuous Dynamical Systems 9 (4), 793-799.
LBNL-51991. F. A. Grunbaum and L. F. Matusevich (2005). Explicit inversion formulas for a model in diffuse tomography. Advances in Applied Mathematics 29 (2), 172-83.
LBNL-48661. A. J. Chorin, O. H. Hald, and R. Kupferman (2005). Optimal prediction with memory. Physica D 166, 239-257.
LBNL-44867. J. Wright, S. Yon, and C. Pozrikidis (2005). Numerical studies of two-dimensional Faraday Oscillations of Inviscid Fluids. Journal of Fluid Mechanics 402, 1-32.
2004
LBNL/PUB-5510. E. W. Bethel (2004). Infrastructure for Scalable and Interoperable Visualization and Analysis Software Technology. http://www-library.lbl.gov/docs/PUB/5510/PDF/PUB-5510.pdf
LBNL/PUB-912. E. W. Bethel, J. Shalf, and C. Siegerist (2004). Remote and distributed high performance scientific visualization - Terabytes to insights. http://www-library.lbl.gov/docs/PUB/912/PDF/PUB-912.pdf
LBNL/PUB-894. J. Shalf, E. W. Bethel, and C. Siegerist (2004). Personal Display Wall. http://www-library.lbl.gov/docs/PUB/894/PDF/PUB-894.pdf
LBNL/PUB-893. C. Siegerist, J. Shalf, and E. W. Bethel (2004). VisPortal: Increasing Scientific Productivity by Simplifying Access to and Use of Remote Computational Resources. http://www-library.lbl.gov/docs/PUB/893/PDF/PUB-893.pdf
LBNL/PUB-892. C. Siegerist, J. Shalf, E. W. Bethel, and C. Siegerist (2004). Interactive Remote and Distributed Visualization of Fusion Simulation Results. http://www-library.lbl.gov/docs/PUB/892/PDF/PUB-892.pdf
LBNL-58539. E. Strohmaier, H. W. Meuer, J. Dongarra, and H. D. Simon (2004). TOP500 Supercomputers for June 2004. http://www-library.lbl.gov/docs/LBNL/585/39/PDF/LBNL-58539.pdf
LBNL-58532. E. Strohmaier, H. W. Meuer, J. Dongarra, and H. D. Simon (2004). TOP500 Supercomputers for November 2004. http://www-library.lbl.gov/docs/LBNL/585/32/PDF/LBNL-58532.pdf
LBNL-58444. E. Strohmaier, D. J. J., H. W. Meuer, and H. D. Simon (2004). Recent Trends in the Marketplace of High Performance Computing. Cyberinfrastructure Technology Watch 1 (1), 12-16.
LBNL-58092. K. Wu, A. Shoshani, W.-M. Zhang, J. Lauret, and V. Perevoztchikov (2004). Grid Collector: Using an event catalog to speed up user analysis in distributed environment. In Computing in High Energy and Nuclear Physics (CHEP) 2004, Interlaken, Switzerland. http://www-library.lbl.gov/docs/LBNL/580/92/PDF/LBNL-58092.pdf
LBNL-57859. C. Lidman, D. A. Howell, G. Folatelli, G. Garavini, S. Nobili, G. Aldering, R. Amanullah, P. Antilogus, P. Astier, G. Blanc, M. S. Burns, A. Conley, S. E. Deustua, M. Doi, R. Ellis, S. Fabbro, V. Fadeyev, R. Gibbons, G. Goldhaber, A. Goobar, D. E. Groom, I. Hook, N. Kashikawa, A. G. Kim, R. A. Knop, B. C. Lee, J. Mendez, T. Morokuma, K. Motohara, P. E. Nugent, R. Pain, S. Perlmutter, V. Prasad, R. Quimby, J. Raux, N. Regnault, P. Ruiz-Lapuente, G. Sainton, B. E. Schaefer, K. Schahmaneche, E. Smith, A. L. Spadafora, V. Stanishev, N. A. Walton, L. Wang, W. M. Wood-Vasey, and N. Yasuda (2004). Spectroscopic confirmation of high-redshift supernovae with the ESO VLT. Astronomy and Astrophysics 430, 843-851.
LBNL-57074. J. F. Grcar (2004). John von Neumann Birthday Centennial. SIAM News 38 (2), 1. http://www-library.lbl.gov/docs/LBNL/570/74/PDF/LBNL-57074.pdf
LBNL-56977. I. Bowman, J. Shalf, K.-L. Ma, and W. Bethel (2004). Performance Modeling for 3D Visualization in a Heterogeneous Computing Environment. http://www-library.lbl.gov/docs/LBNL/569/77/PDF/LBNL-56977.pdf
LBNL-56936. D. Rotem, K. Stockinger, and K. Wu (2004). Efficient binning for bitmap indices on high-cardinality attributes. http://www-library.lbl.gov/docs/LBNL/569/36/PDF/LBNL-56936.pdf
LBNL-56772. J. F. Grcar, M. S. Day, and J. B. Bell (2004). A taxonomy of integral reaction path analysis. Combustion Theory and Modelling.
LBNL-56729. J. P. U. Fynbo, J. Gorosabel, A. Smette, A. Fruchter, J. Hjorth, K. Pedersen, A. Levan, I. Burud, K. Sahu, P. M. Vreeswijk, E. Bergeron, C. Kouveliotou, N. Tanvir, S. E. Thorsett, R. A. M. J. Wijers, A. Castro-Tirado, P. Jakobsson, J. M. Castro Ceron, P. Garnavich, S. T. Holland, P. Moller, P. Nugent, E. Pian, J. Rhoads, D. Watson, and S. Woosley (2004). On the afterglow and host galaxy of GRB 021004: A comprehensive study with the Hubble Space Telescope. Astrophysical Journal 633 (1pt1), 317-27. http://www-library.lbl.gov/docs/LBNL/567/29/PDF/LBNL-56729.pdf
LBNL-56715. D. Stern, P. G. van Dokkum, P. Nugent, D. J. Sand, R. S. Ellis, M. Sullivan, J. S. Bloom, D. A. Frail, J.-P. Kneib, L. V. E. Koopmans, and T. Treu (2004). Discovery of a transient U-band dropout in a lyman break survey: A tidally disrupted star at z=3.3? Astrophysical Journal 612, 690-97.
LBNL-56627. Z. Dragojlovic, F. Najmabadi, and M. S. Day (2004). An embedded boundary method for viscous, conducting compressible flow. Journal of Computational Physics.
LBNL-56607. P. Schwartz, M. Barad, P. Colella, and T. Ligocki (2004). A cartesian grid embedded boundary method for the heat equation and poisson's equation in three dimensions. Journal of Computational Physics 211 (2), 531-50. http://www-library.lbl.gov/docs/LBNL/566/07/PDF/LBNL-56607.pdf
LBNL-56545. H. Simon, W. Kramer, W. Saphir, J. Shalf, D. Bailey, L. Oliker, M. Banda, C. W. McCurdy, J. Hules, A. Canning, M. Day, P. Colella, D. Serafini, M. Wehner, and P. Nugent (2004). Science-driven system architecture: A new process for leadership class computing. Journal of the Earth Simulator 2, 2-10. http://www-library.lbl.gov/docs/LBNL/565/45/PDF/LBNL-56545.pdf
LBNL-56495. D. Bonachea (2004). Proposal for extending the UPC memory copy library functions and suppo rting extensions to GASNet, Version 1.0. http://www-library.lbl.gov/docs/LBNL/564/95/PDF/LBNL-56495.pdf
LBNL-56420. P. Colella, D. T. Graves, B. J. Keen, and D. Modiano (2004). A cartesian grid embedded boundary method for hyperbolic conservation laws. Journal of Computational Physics 51 (12), 1183-86. http://www-library.lbl.gov/docs/LBNL/564/20/PDF/LBNL-56420.pdf
LBNL-56376. K. Stockinger and K. Wu (2004). Improved searching for spatial features in spatio-temporal data. http://www-library.lbl.gov/docs/LBNL/563/76/PDF/LBNL-56376.pdf | http://www-library.lbl.gov/docs/LBNL/563/76/PS/LBNL-56376.ps
LBNL-56325. C. Yang, W. Gao, Z. Bai, X. Li, L.-Q. Lee, P. Husbands, and E. G. Ng (2004). Algebraic sub-structuring for electromagnetic applications. In PARA'04 Workshop on State-of-the-art in Scientific Computing, Copenhagen, Denmark. http://www-library.lbl.gov/docs/LBNL/563/25/PDF/LBNL-56325.pdf
LBNL-56306. E. Strohmaier and H. Shan (2004). Architecture independent performance characterization and benchmarking for scientific applications. In MASCOTS 2004, Volendam, The Netherlands. http://www-library.lbl.gov/docs/LBNL/563/06/PDF/LBNL-56306.pdf
LBNL-56260. L. A. Drummond, V. Hernandez, O. Marques, J. E. Roman, and V. Vidal (2004). A Survey of High-Quality Computational Libraries and their Impact in Science and Engineering Applications. In High Performance Computing for Computational Science, VECPAR 2004, edited by J. D. M. Dayde, V. Hernandez and J. Palma, Springer-Verlag, Valencia, Spain, 3402. http://www-library.lbl.gov/docs/LBNL/562/60/PDF/LBNL-56260_Conf.pdf
LBNL-56193. E. Baron, P. E. Nugent, D. Branch, and P. H. Hauschildt (2004). Type IIP supernovae as cosmological probes: A SEAM distance to SN 1999em. Astrophysical Journal 616, 91. http://www-library.lbl.gov/docs/LBNL/561/93/PDF/LBNL-56193.pdf | http://www-library.lbl.gov/docs/LBNL/561/93/PS/LBNL-56193.ps | http://www-library.lbl.gov/
LBNL-56190. M. Barad and P. Colella (2004). A fourth order accurate adaptive mesh refinement method for poisson's equation. Journal of Computational Physics 209 (1), 1-18. http://www-library.lbl.gov/docs/LBNL/561/90/PDF/LBNL-56190.pdf
LBNL-56116. A. Pinar and V. Vassilevska (2004). Finding nonoverlapping substructures of a sparse matrix. Electronic Transactions on Numerical Analysis 21, 107-124. http://www-library.lbl.gov/docs/LBNL/561/16/PDF/LBNL-56116.pdf
LBNL-55880. D. Trebotich, P. Colella, and G. Miller (2004). A stable and convergent scheme for viscoelastic flow in contraction channels. Journal of Computational Physics 205 (1), 315-342. http://www-library.lbl.gov/docs/LBNL/558/80/PDF/LBNL-55880.pdf
LBNL-55869. R. Oliva, S. Crivelli, and J. Meza (2004). Protein-folding via divide-and-conquer optimization. In SIAM Conference on the Life Sciences, Portland, OR. http://www-library.lbl.gov/docs/LBNL/558/69/PDF/LBNL-55869.pdf
LBNL-55724. W. T. C. Kramer, A. Shoshani, D. A. Agarwal, B. R. Draney, G. Jin, G. F. Butler, and J. A. Hules (2004). Deep scientific computing requires deep data. IBM Research and Development 48 (2), 209-232.
LBNL-55690. A. Pinar, T. Tao, and H. Ferhatosmanoglu (2004). Compressing bitmap indices by data reorganization. In International Conference on Data Engineering, IEEE, Tokyo, Japan. http://www-library.lbl.gov/docs/LBNL/556/90/PDF/LBNL-55690.pdf | http://www-library.lbl.gov/docs/LBNL/556/90/PS/LBNL-55690.ps
LBNL-55635. H. Shan, E. Strohmaier, and L. Oliker (2004). Optimizing performance of superscalar codes for a single Cray X1 MSP processor. In Cray Uers Group CUG 2004, Knoxville, TN. http://www-library.lbl.gov/docs/LBNL/556/35/PDF/LBNL-55635.pdf
LBNL-55612. J. Ahrens and I. Collaboration (2004). Status of the icecube neutrino observatory. In 2nd VERITAS Symposium on TeV Astrophysics of Extragalactic Sources, Chicago, 48.
LBNL-55611. M. Ackermann and A. Collaboration (2004). Amanda: status and latest results. In 39th Rencontres de Moriond on Electroweak Interactions and Unified Theories, La Thuile, Aosta Valley, Italy.
LBNL-55610. C. Spierling and I. Collaboration (2004). The icecube project. In VLVnT Workshop on Technical Aspects of a Very Large Volume Neutrino Telescope in the Mediterrenean Sea, Amsterdam, The Netherlands, astro-ph/0404090.
LBNL-55587. E. Otoo, D. Rotem, A. Romosan, and S. Seshadri (2004). File caching in data intensive scientific applications. In 1st International Workshop on Data Management in Grids, edited by none, Springer Verlag, Lecture Notes in Computer Science, LNCS, Trondheim, Norway. http://www-library.lbl.gov/docs/LBNL/555/87/PDF/LBNL-55587.pdf
LBNL-55540. K. Stockinger, K. Wu, and A. Shoshani (2004). Evaluation Strategies for Bitmap Indices with Binning. In 15th International Conference on Database and Expert Systems Applications (DEXA), edited by T. Galindo, and Traunmuller, Springer-Verlag, Zaragoza, Spain, 3180. http://www-library.lbl.gov/docs/LBNL/555/40/PDF/LBNL-55540.pdf | http://www-library.lbl.gov/docs/LBNL/555/40/PS/LBNL-55540.ps
LBNL-55531. G. H. Miller (2004). Minimal rotationally-invariant bases for hyperelasticity. SIAM Journal on Applied Mathematics 64 (6), 2050-75.
LBNL-55480. L.-W. Wang (2004). Quantum transport calculations using periodic boundary conditions. Physical Review B 72, 45417. http://www-library.lbl.gov/docs/LBNL/554/80/PDF/LBNL-55480.pdf | http://www-library.lbl.gov/docs/LBNL/554/80/PS/LBNL-55480.ps
LBNL-55394. N. Shah, A. Poliakov, D. Ryaboy, M. V. Teplitsky, B. Hamann, E. M. Rubin, and I. L. Dubchak (2004). VISTA tools for interactive visualization and analysis of multiple alignments of DNA sequences and whole genomes. In The Biology of Genomes, Cold Spring Harbor, NY, USA. http://www-library.lbl.gov/docs/LBNL/553/94/PDF/LBNL-55394_Abs.pdf
LBNL-55386. N. Shah, G. H. Weber, S. E. Dillard, and B. Hamann (2004). Volume visualization of multiple alignment of genomic DNA. In IEEE Symposium on Information Visualization, IEEE Press, Austin TX. http://www-library.lbl.gov/docs/LBNL/553/86/PDF/LBNL-55386.pdf
LBNL-55353. C. S. Co, A. Friedman, D. P. Grote, J.-L. Vay, E. W. Bethel, and K. I. Joy (2004). Interactive methods for exploring particle simulation data. In IEEE Visualization 2004, Austin, TX. http://www-library.lbl.gov/docs/LBNL/553/53/PDF/LBNL-55353.pdf
LBNL-55346. M. Wehner, L. Oliker, D. Parks, and W.-S. Wang (2004). High resolution atmospheric general circulation model simulations on vector and cache-based architectures. In SIAM Conference on Parallel Processing for Scientific Computing, San Francisco, CA. http://www-library.lbl.gov/docs/LBNL/553/46/HTML/LBNL-55346_Abs.html
LBNL-55302. P. K. Agarwal, R. A. Alexander, E. Apra, S. Balay, A. S. Bland, J. Colgan, E. F. D'Azevedo, J. J. Dongarra, T. H. Dunigan Jr., M. R. Fahey, R. A. Fahey, A. Geist, M. Gordon, R. J. Harrison, D. Kaushik, M. Krishnakumar, P. Luszczek, A. Mezzacappa, J. A. Nichols, J. Nieplocha, L. Oliker, T. Packwood, M. S. Pindzola, T. C. Schulthess, J. S. Vetter, J. B. White III, T. L. Windus, P. H. Worley, T. Zacharia, and T. Zacharia (2004). ORNL Cray X1 evaluation status report. In 46th Cray User Group Conference, Knoxville, TN. http://www-library.lbl.gov/docs/LBNL/553/02/PDF/LBNL-55302.pdf
LBNL-55292. J. Li and L.-W. Wang (2004). Deformation potentials of CdSe quantum dots. Applied Physics Letters 85 (14), 2929-2931. http://www-library.lbl.gov/docs/LBNL/552/92/PDF/LBNL-55292.pdf
LBNL-55291. H. D. Simon, L. Oliker, A. Canning, J. Carter, S. Ethier, and J. Shalf (2004). Evaluation of leading scalar and vector architectures for scientific computations. http://www-library.lbl.gov/docs/LBNL/552/91/PDF/LBNL-55291.pdf
LBNL-55141. D. N. Kasen (2004). Aspherical supernovae. In Physics, University of California, Berkeley, Berkeley, CA. http://www-library.lbl.gov/docs/LBNL/551/41/PDF/LBNL-55141.pdf | http://www-library.lbl.gov/docs/LBNL/551/41/PS/LBNL-55141.ps
LBNL-55082. H. Shan and E. Strohmaier (2004). Performance characteristics of the Cray X1 and their implications for application performance tuning. In 18th Annual ACM International Conference on SUpercomputing, edited by G. Feautrier, Seznec, Association for Computing Machinery, St. Malo, France. http://www-library.lbl.gov/docs/LBNL/550/82/PDF/LBNL-55082.pdf
LBNL-55075. Q. Yang, B. Parvin, and M. H. Barcellos-Hoff (2004). Localization of saliency through iterative voting. In 17th International Conference of Pattern Recognition, IEEE, Cambridge, UK.
LBNL-55050. C. Yang, W. Gao, Z. Bai, X. Li, L. Lee, P. Husbands, and E. Ng (2004). An algebraic sub-structuring method for large-scale eigenvalue calculation. Society for Industrial and Applied Mathematics: Journal on Matrix Analysis and Applications.
LBNL-55031. G. Cong, M. Esser, B. Parvin, and G. Bebis (2004). Shape Metamorphism Using p-Laplacian Equation. In International Conference on Pattern Recognition, Oxford England. http://www-library.lbl.gov/docs/LBNL/550/31/PDF/LBNL-55031.pdf
LBNL-54943. D. Kasen, P. Nugent, R. C. Thomas, and L. Wang (2004). Could there be a hole in type Ia supernovae? Astrophysical Journal 610 (2 pt1), 876-87. http://www-library.lbl.gov/docs/LBNL/549/43/PDF/LBNL-54943.pdf | http://www-library.lbl.gov/ | http://www-library.lbl.gov/docs/LBNL/549/43/PS/LBNL-54943.ps
LBNL-54915. C. Ding, X. He, R. F. Meraz, and S. R. Holbrook (2004). A unified representation of multi-protein complex data for modelling interaction networks. In RECOMB 2004 (Research in Computational Molecular Biology), San Diego, CA.
LBNL-54906. L. Oliker, R. Biswas, H. Shan, and W. Smith (2004). Job scheduling in a heterogenous grid environment. http://www-library.lbl.gov/docs/LBNL/549/06/PDF/LBNL-54906.pdf
LBNL-54905. L. Oliker, R. Biswas, J. Borrill, A. Canning, J. Carter, J. Djomehri, H. Shan, and D. Skinner (2004). A performance evaluation of the Cray X1 for scientific applications. In VECPAR'04: 6th International Meeting on High Performance Computing for Computational Science, Valencia, Spain. http://www-library.lbl.gov/docs/LBNL/549/05/PDF/LBNL-54905.pdf
LBNL-54904. L. Oliker (2004). Performance evaluation of the SX-6 vector architecture for scientific computations. In SIAM Parallel Processing for Scientific Computing, San Francisco, CA.
LBNL-54901. G. Griem, L. Oliker, J. Shalf, and K. Yelick (2004). Identifying performance bottlenecks on modern microarchitectures using an adaptable probe. In 3rd International Workshop on Performance Modeling, Evaluation, and Optimization of Parallel and Distributed Systems, Santa Fe, NM. http://www-library.lbl.gov/docs/LBNL/549/01/PDF/LBNL-54901.pdf
LBNL-54881. E. Otoo, D. Rotem, and A. Romosan (2004). Optimal file-bundle caching algorithms for data-grids. In SC2004 High Performance Computing, Networking and Storage Conference, Pittsburg, PA. http://www-library.lbl.gov/docs/LBNL/548/81/PDF/LBNL-54881.pdf
LBNL-54880. E. J. Otoo, D. Rotem, and S. Seshadri (2004). Efficient algorithms for multi-file caching. In 15th International Conference on Database and Expert Systems Applications, Zaragoza, Spain. http://www-library.lbl.gov/docs/LBNL/548/80/PDF/LBNL-54880.pdf
LBNL-54854. A. Sim, J. Gu, A. Shoshani, and V. Natarajan (2004). DataMover: robust terabyte-scale multi-file replication over wide-area networks. In Proceedings of the 16th International Conference on Scientific and Statistical Database Management (SSDBM 2004), Greece. http://www-library.lbl.gov/docs/LBNL/548/54/PDF/LBNL-54854.pdf
LBNL-54814. J. Li and L.-W. Wang (2004). Comparison of quantum confinement effects between quantum wires and dots. Chemistry of Materials 16 (21), 4012-4015. http://www-library.lbl.gov/docs/LBNL/548/14/PDF/LBNL-54814.pdf
LBNL-54813. L.-W. Wang (2004). Effects of stacking faults on the electronic structures of quantum rods. Journal of Computational and Theoretical Nanoscience 1 (3), 298-302. http://www-library.lbl.gov/docs/LBNL/548/13/PDF/LBNL-54813.pdf
LBNL-54811. L.-W. Wang and J. Li (2004). First principle thousand atom quantum dot calculations. Physical Review B 69, 153302. http://www-library.lbl.gov/docs/LBNL/548/11/PDF/LBNL-54811.pdf
LBNL-54810. J. Li and L.-W. Wang (2004). First principle study of core/shell structure quantum dots. Applied Physics Letter 84 (18), 3648. http://www-library.lbl.gov/docs/LBNL/548/10/PDF/LBNL-54810.pdf
LBNL-54766. J. B. Bell, M. S. Day, J. F. Grcar, and M. J. Lijewski (2004). Active control for turbulent premixed flame simulations. In Western States Section of the Combustion Institute 2004 Spring Meeting, Davis, CA. http://www-library.lbl.gov/docs/LBNL/547/66/PDF/LBNL-54766.pdf
LBNL-54762. A. Levan, P. Nugent, A. Fruchter, I. Burud, D. Branch, J. Rhoads, A. Castro-Tirado, J. Gorosabel, J. M. C. Ceron, S. E. Thorsett, C. Kouveliotou, S. Golenetskii, J. Fynbo, P. Garnavich, S. Holland, J. Hjorth, P. Moller, E. Pian, N. Tanvir, M. Ulanov, R. Wijers, and S. Woosley (2004). GRB 020410: A Gamma-ray burst afterglow discovered by its supernova light. The Astrophysical Journal 624 (2pt1), 880-888. http://www-library.lbl.gov/docs/LBNL/547/62/PDF/LBNL-54762.pdf
LBNL-54728. Q. Yang and B. Parvin (2004). Perceptual Organization of Radial Symmetries. In Computer Vision and Pattern Recognition, IEEE, Baltimore, MD.
LBNL-54723. V. Brady, P. Concus, and R. Finn (2004). Computational investigation of unusual behavior in certain capillary tubes. Microgravity Science and Technology XV (4), 31-38. http://www-library.lbl.gov/docs/LBNL/547/23/PDF/LBNL-54723.pdf
LBNL-54673. K. Wu, E. Otoo, and A. Shoshani (2004). On the performance of bitmap indices for high cardinality attributes. In VLDB 2004: 30th International Conference on Very Large Data Bases, Toronto, Canada. http://www-library.lbl.gov/docs/LBNL/546/73/PDF/LBNL-54673.pdf
LBNL-54576. J. Shalf and T. Goodale (2004). GridRun: A lightweight packaging and execution environment for compact, multi-architecture binaries. In Thirteenth IEEE International Symposium on High-Performance Distributed Computing, Honolulu, HI. http://www-library.lbl.gov/docs/LBNL/545/76/PDF/LBNL-54576_Ext._Abs.pdf
LBNL-54497. L. Grigori and X. S. Li (2004). Performance analysis of parallel supernodal sparse LU factorization. In PARA'04 Workshop on State-of-the-Art in Scientific Computing, LNCS, Lyngby, Copenhagen, Denmark. http://www-library.lbl.gov/docs/LBNL/544/97/PDF/LBNL-54497.pdf
LBNL-54465. R. Kupferman, G. A. Pavliotis, and A. M. Stuart (2004). Ito versus stratonovich white noise limits for systems with inertia and colored multiplicative noise. Physical Review E 70, 1-9.
LBNL-54463. D. Givon, R. Kupferman, and A. Stuart (2004). Extracting macroscopic dynamics: Model problems and algorithms. Nonlinearity 17, R55-R127.
LBNL-54462. R. Kupferman and A. M. Stuart (2004). Fitting SDE models to nonlinear Kac-Zwanzig heat bath models. Physica D 199, 279-316.
LBNL-54351. J. B. Bell (2004). AMR for low Mach number reacting flow. In Chicago Workshop on Adaptive Mesh Refinement Methods, Springer Verlag, Chicago, Illinois. http://www-library.lbl.gov/docs/LBNL/543/51/PDF/LBNL-54351.pdf
LBNL-54300. J. B. Bell, M. S. Day, C. A. Rendleman, S. E. Woosley, and M. Zingale (2004). Direct numerical simulations of type Ia supernovae flames II: The rayleigh-taylor instability. Astrophysical Journal 608 (pt.1), 883-906. http://www-library.lbl.gov/docs/LBNL/543/00/PDF/LBNL-54300.pdf
LBNL-54138. P. McCorquodale, P. Colella, D. P. Grote, and J.-L. Vay (2004). A node-centered local refinement algorithm for poisson's equation in complex geometries. Journal of Computational Physics 201 (1), 34-60. http://www-library.lbl.gov/docs/LBNL/541/38/PDF/LBNL-54138.pdf
LBNL-54136. N. Shah, O. Couronne, L. A. Pennacchio, M. Brudno, S. Batzoglou, E. W. Bethel, E. M. Rubin, B. Hamann, and I. Dubchak (2004). Phylo-VISTA: An Interactive Visualization Tool for Multiple DNA Sequence Alignments. http://www-library.lbl.gov/docs/LBNL/541/36/PDF/LBNL-54136.pdf
LBNL-53731. S. Crivelli, O. Kreylos, N. Max, B. Hamann, and W. Bethel (2004). ProteinShop: A tool for interactive protein manipulation and steering. Journal of Computer-Aided Molecular Design 18 (4), 271-85. http://www-library.lbl.gov/docs/LBNL/537/31/PDF/LBNL-53731.pdf
LBNL-53515. M. F. Wehner (2004). Predicted 21st century changes in seasonal extreme precipitation events in the parallel climate model. Journal of Climate 17 (21), 4281-90. http://www-library.lbl.gov/docs/LBNL/535/15/PDF/LBNL-53515.pdf
LBNL-53509. J. Li and L.-W. Wang (2004). First principle calculations of ZnS:Te energy levels. Physical Review B 67, 205319(1-11).
LBNL-53508. L.-W. Wang, M. Califano, A. Zunger, and A. Fraceschetti (2004). Pseudopotential theory of Auger processes in CdSe quantum dots. Physical Review Letter 9105 (5), 6404. http://www-library.lbl.gov/docs/LBNL/535/08/PDF/LBNL-53508.pdf
LBNL-52136. D. Givon, O. H. Hald, and R. Kupferman (2004). Existence proof for orthogonal dynamics and the Mori-Zwanzig formalism. Israel Journal of Mathematics 145, 221-241.
LBNL-49626. K. Wu, E. J. Otoo, and A. Shoshani (2004). An efficient compression scheme for bitmap indices. http://www-library.lbl.gov/docs/LBNL/496/26/PDF/LBNL-49626.pdf
LBNL-49326. J. B. Bell, M. S. Day, J. F. Grcar, and M. J. Lijewski (2004). Stochastic algorithms for the analysis of numerical flame simulations. Journal of Computational Physics 202 (1), 262-80. http://www-library.lbl.gov/docs/LBNL/493/26/PDF/LBNL-49326_Journal.pdf
LBID-2511. E. Strohmaier and H. Shan (2004). Architecture independent performance characterization and benchmarking for scientific applications.
2003
LBNL-55881. Crockett, R. K., P. Colella, R. T. Fisher, R. I. Klein and C. F. McKee (2003). An unsplit, cell-centered godunov method for ideal MHD. Journal of Computational Physics.
LBNL-55563. Wu, K., W.-M. Zhang, A. Sim, J. Gu and A. Shoshani (2003). Grid collector: An event catalog with automated file management. IEEE Nuclear Science Syposium 2003, Portland OR, IEEE. http://www-library.lbl.gov/docs/LBNL/555/63/PDF/LBNL-55563.pdf | http://www-library.lbl.gov/docs/LBNL/555/63/PS/LBNL-55563.ps
LBNL-54907. Oliker, L., G. Gorden, P. Husbands and J. Chame (2003). Evaluation of architectural paradigms for addressing the processor-memory gap. http://www-library.lbl.gov/docs/LBNL/549/07/PDF/LBNL-54907.pdf
LBNL-54903. Griem, G. and L. Oliker (2003). Transitive closure on the imagine stream processor. Fifth Workshop on Media and Stream Processors (MSP5), San Diego, CA. http://www-library.lbl.gov/docs/LBNL/549/03/PDF/LBNL-54903.pdf
LBNL-54198. Bell, J. B., M. S. Day, I. G. Shepherd, M. Johnson, R. K. Cheng, V. E. Beckner, M. J. Lijewski and J. F. Grcar (2003). Numerical simulation of a laboratory-scale turbulent V-flame. Proceedings of the Combustion Institute.
LBNL-54187. Grcar, J. F., P. Glarborg, J. B. Bell, M. S. Day, A. Loren and A. D. Jensen (2003). Effects of mixing on ammonia oxidation in combustion environments at intermediate temperatures. Proceedings of the Combustion Institute. http://www-library.lbl.gov/docs/LBNL/541/87/PDF/LBNL-54187.pdf
LBNL-54161. Meza, J. C., R. A. Oliva, P. D. Hough and P. J. Williams (2003). OPT++: An object-oriented toolkit for nonlinear optimization. ACM Transactions on Mathematical Software.
LBNL-54135. Shah, N., O. Couronne, L. A. Pennacchio, M. Brudno, S. Batzoglou, E. W. Bethel, E. M. Rubin, B. Hamann and Dubchak.I. (2003). Phylo-vista: Interactive visualization of DNA multiple alignments. Bioinformatics 20(5).
LBNL-54107. Allen, G., K. Davis, K. N. Dolkas, N. D. Doulamis, T. Goodale, T. Kielmann, A. Merzky, J. Nabrzyski, J. Pukacki, T. Radke, M. Russell, E. Seidel, J. Shalf and I. Taylor (2003). Enabling applications on the Grid - A Gridlab overview. International Journal on High Performance Computing Applications 17(4).
LBNL-54088. Bell, J. B., M. S. Day, C. A. Rendleman, S. E. Woosley and M. Zingale (2003). Direct numerical simulations of type Ia supernovae flames I: The landau-darrieus instability. Astrophysical Journal.
LBNL-54031 Abs. Shalf, J., M. J. Bennett and G. Bell (2003). Transport requirements for high performance network applications that are NOT FTP. Second International Workshop on Protocols for Fast Long-Distance Networks, Chicago, Illinois. http://www-library.lbl.gov/docs/LBNL/540/31/PDF/LBNL-54031_Abs.pdf
LBNL-54010. Iancu, C., P. Husbands and W. Chen (2003). Message strip mining heuristics for high speed networks. http://www-library.lbl.gov/docs/LBNL/540/10/PDF/LBNL-54010.pdf | http://www-library.lbl.gov/docs/LBNL/540/10/PS/LBNL-54010.ps
LBNL-53989. Pinar, A. (2003). High-performance combinatorial algorithms. http://www-library.lbl.gov/docs/LBNL/539/89/PDF/LBNL-53989.pdf | http://www-library.lbl.gov/docs/LBNL/539/89/SRC/LBNL-53989.doc
LBNL-53988 Abs. Pinar, A., M. Singh and E. Ng (2003). Nested dissection orderings for LU factorization with static pivoting. SIAM Workshop on Combinatorial Scientific Computing, San Francisco. http://www-library.lbl.gov/docs/LBNL/539/88/PDF/LBNL-53988_Abs.pdf
LBNL-53986. Day, M. S., J. B. Bell, M. J. Lijewski, M. Johnson, R. K. Cheng and I. G. Shepherd (2003). Adaptive low mach number simulations of a premixed turbulent laboratory burner. The Fall 2003 Meeting of the Western States Section/The Combustion Institute, UCLA Campus (UCLA Faculty Center). http://www-library.lbl.gov/docs/LBNL/539/86/PDF/LBNL-53986.pdf
LBNL-53854. Amestoy, P. R., X. S. Li and E. G. Eg (2003). Diagonal Markowitz scheme with local symmetrization. SIAM J. Matrix Anal. Appl.
LBNL-53849. Kang, N. and L. A. Drummond (2003). A first prototype of PyACTS. http://www-library.lbl.gov/docs/LBNL/538/49/PDF/LBNL-53849.pdf
LBNL-53848. Li, X. S. (2003). An overview of SuperLU: Algorithms, implementation, and user interface. ACM Trans. on Math. Software (Special Issue on the DOE ACTS Collection).
LBNL-53838. Strohmaier, E. (2003). Top500 list's twice-yearly snapshots of world's fastest supercomputers develop into big picture of changing technology. Scientific Computing and Instrumentation 20(9).
LBNL-53808. Sankaran, S., J. M. Squyres, B. Barrett, A. Lumsdaine, J. Duell, P. Hargrove and E. Roman (2003). The LAM/MPI checkpoint/restart framework: System-initiated checkpointing. 2003 Los Alamos Computer Science Institute Symposium, El Dorado Hotel; Santa Fe, NM. http://www-library.lbl.gov/docs/LBNL/538/08/PDF/LBNL-53808.pdf
LBNL-53795. Miller, G. H. (2003). An iterative Riemann solver for systems of hyperbolic conservation law s, with application to hyperelastic solid mechanics. Journal of Computational Physics 193(1).
LBNL-53758. Pinar, A. and B. Hendrickson (2003). Improving load balance with flexibly assignable tasks. IEEE Transactions on Parallel and Distributed Systems.
LBNL-53688. McCorquodale, P. (2003). AMRNodeElliptic user guide: On irregular problem domains. http://www-library.lbl.gov/docs/LBNL/536/88/PDF/LBNL-53688.pdf
LBNL-53687. McCorquodale, P. (2003). AMRNodeElliptic user guide: On rectangular problem domains. http://www-library.lbl.gov/docs/LBNL/536/87/PDF/LBNL-53687.pdf
LBNL-53686. McCorquodale, P. (2003). AMRNodeElliptic software package node-centered AMR for elliptic probl ems. http://www-library.lbl.gov/docs/LBNL/536/86/PDF/LBNL-53686.pdf
LBNL-53685. Meza, J. C. and R. A. Oliva (2003). An Object Oriented Library To Manage The Collection Of Schittkowki Test Problems For Nonlinear Optimization. ACM Richard Tapia Celebration of Diversity in Computing 2003, Atlanta, GA.
LBNL-53655. Day, M. S., J. B. Bell, A. S. Almgren, V. E. Beckner, M. J. Lijewski, R. Cheng, I. Shepherd and M. Johnson (2003). Numerical simulation of premixed turbulent methane combustion. Second M.I.T. Conference on Computational Fluid and Solid Mechanics, Albuquerque, NM, Elsevier Science. http://www-library.lbl.gov/docs/LBNL/536/55/PDF/LBNL-53655.pdf
LBNL-53653. Strohmaier, E. and H. W. Meuer (2003). Supercomputing: What have we learned from the TOP500 project? Algorithmy 2002, Conference on Scientific Computing, Vysoke Tatry, Podbanske.
LBNL-53624. Li, X. S. and Y. Wang (2003). Performance evaluation and enhancement of SuperLU_DIST 2.0. http://www-library.lbl.gov/docs/LBNL/536/24/PDF/LBNL-53624.pdf
LBNL-53570. Rescigno, T. N., M. Baertschy and C. W. McCurdy (2003). Resolution of phase ambiguities in electron-impact ionization amplitudes. Physical Review A 68(3).
LBNL-53521. Yang, W.-S. and C. Ding (2003). ZioLib: A parallel I/O library. http://www-library.lbl.gov/docs/LBNL/535/21/PDF/LBNL-53521.pdf | http://www-library.lbl.gov/docs/LBNL/535/21/PS/LBNL-53521.ps
LBNL-53368 Abs. Bethel, E. W. (2003). Interoperability of Visualization Software and Data Models is Not an Achievable Goal. IEEE Visaulization 2003, Seattle, WA. http://www-library.lbl.gov/docs/LBNL/533/68/PDF/LBNL-53368_Abs.pdf
LBNL-53118. Shan, H., L. Oliker and R. Biswas (2003). Job superscheduler architecture and performance in computational grid environments. SC2003: High performance computing, networking, and storage conference, Phoenix, AZ.
LBNL-53117. Oliker, L., A. Canning, J. Carter, J. Shalf, D. Skinner, S. Ethier, R. Biswas, J. Djomehri and R. Van der Wijngaart (2003). Evaluation of cache-based superscalar and cacheless vector architectures for scientific computations. SC2003: High Performance Computing, Networking and Storage Conference, Phoenix, AZ. http://www-library.lbl.gov/docs/LBNL/531/17/PDF/LBNL-53117.pdf
LBNL-53116. Oliker, L., J. Duell, M. Narayanan and S. Chatterji (2003). Performance evaluation of two emerging media processors: VIRAM and imagine. Workshop on Parallel and Distributed Image Processing, Video Processing, and Multimedia (PDIVM), Nice, France. http://www-library.lbl.gov/docs/LBNL/531/16/PDF/LBNL-53116.pdf
LBNL-53115. Biswas, R., L. Oliker and H. Shan (2003). Parallel computing strategies for irregular algorithms. Annual review of scalable computing. Y. C. Kwong, Singapore University Press, World Scientific. 5. http://www-library.lbl.gov/docs/LBNL/531/15/PDF/LBNL-53115.pdf
LBNL-53023. Otoo, E. J. and A. Shoshani (2003). Accurate modeling of cache replacement policies in a Data-Grid. Twentieth IEEE/Eleventh NASA Goddard Conference on Mass Storage System & Technologies, San Diego, California, IEEE Computer Society. http://www-library.lbl.gov/docs/LBNL/530/23/PDF/LBNL-53023.pdf
LBNL-53022. Otoo, E. J., D. Rotem and A. Shoshani (2003). Impact of admission and cache replacement policies on response times of jobs on data grids. Challenges of Large Applications in Distributed Environments (CLADE'2003), Seattle, Washington, IEEE, Computer Society. http://www-library.lbl.gov/docs/LBNL/530/22/PDF/LBNL-53022.pdf
LBNL-52998. Bethel, E. W., G. Humphreys, B. Paul and J. D. Brederson (2003). Sort-First, Distributed Memory Parallel Visualization and Rendering. 2003 Symposium on Parallel Visualization and Graphics, IEEE Visualization, Seattle, WA. http://www-library.lbl.gov/docs/LBNL/529/98/PDF/LBNL-52998.pdf
LBNL-52940. Bethel, W., C. Siegerist, J. Shalf, P. Shetty, T. J. Jankun-Kelly, O. Kreylos and K.-L. Ma (2003). VisPortal: Deploying grid-enabled visualization tools through a web-portal interface. Workshop on Advanced Collaborative Environments (http://www-unix.mcs.anl.gov/fl/events/wace2003/), Seattle Washington, WACE. http://www-library.lbl.gov/docs/LBNL/529/40/PDF/LBNL-52940.pdf
LBNL-52767. Jagadish, H. V. and F. Olken (2003). Database management for life sciences research: Workshop report National Library of Medicine, February 2-3, 2003.
LBNL-52549. Souza, E. d. (2003). A simulation-based study of HighSpeed TCP and its deployment. School of Electrical and Computer Engineering. Campinas/SP - Brazil, State University of Campinas. http://www-library.lbl.gov/docs/LBNL/525/49/PDF/LBNL-52549.pdf
LBNL-52535. Wu, K., W. Koegler, J. Chen and A. Shoshani (2003). Using bitmap index for interactive exploration of large datasets. 15th International Conference on Scientific and Statistical Database Management, Cambridge, MA 02139. http://www-library.lbl.gov/docs/LBNL/525/35/PDF/LBNL-52535.pdf
LBNL-52456. Butler, G. F., R. C. Lee and M. L. Welcome (2003). The global unified parallel file system (GUPFS) project: FY 2002 activities and results. http://www-library.lbl.gov/docs/LBNL/524/56/PDF/LBNL-52456.pdf
LBNL-52434. Grcar, J. F. (2003). Optimal sensitivity analysis of linear least squares. SIAM Review.
LBNL-52414. Kreylos, O., N. Max, B. Hamann, S. Crivelli and W. Bethel (2003). Interactive protein manipulation. Visualization 2003, Seattle, Washington.
LBNL-52395. Bell, J. B., M. S. Day, C. A. Rendleman, S. E. Woosley and M. A. Zingale (2003). Adaptive low Mach number simulations of nuclear flame microphysics. Journal of Computational Physics.
LBNL-52171. Bethel, W. and J. Shalf (2003). Consuming Network Bandwidth with Visapult. Visualization Handbook. C. J. a. C. Hansen, Academic Press. N/A. http://www-library.lbl.gov/docs/LBNL/521/71/PDF/LBNL-52171.pdf
LBNL-52168. Bell, J. B., M. S. Day, J. F. Grcar and M. J. Lijewski (2003). Analysis of carbon chemistry in numerical simulations of vortex flame interaction. 19th International Colloquium on the Dynamics of Explosions and Reactive Systems, Hakone, Kanagawa, Japan. http://www-library.lbl.gov/docs/LBNL/521/68/PDF/LBNL-52168.pdf
LBNL-52167. Bell, J. B., M. S. Day and A. Kuhl (2003). Numerical simulations of shock-induced mixing and combustion. 19th International Colloquium on the Dynamics of Explosions and Reactive Systems, Hakone, Kanagawa, Japan. http://www-library.lbl.gov/docs/LBNL/521/67/PDF/LBNL-52167.pdf
LBNL-52166. Bell, J. B., M. S. Day, J. F. Grcar, M. J. Lijewski, M. R. Johnson, R. K. Cheng and I. G. Shepherd (2003). Numerical simulation of a premixed turbulent V-flame. 19th International Colloquium on the Dynamics of Explosions and Reactive Systems, Hakone, Kanagawa, Japan, Institute of Dynamics of Explosions and Reactive Systems, Seattle, U.S. http://www-library.lbl.gov/docs/LBNL/521/66/PDF/LBNL-52166.pdf
LBNL-52164. Grcar, J. F., M. S. Day and J. B. Bell (2003). Conditional and opposed reaction path diagrams for the analysis of fluid-chemistry interactions. 19th International Colloquium on the Dynamics of Explosions and Reactive Systems, Hakone, Japan. http://www-library.lbl.gov/docs/LBNL/521/64/PDF/LBNL-52164.pdf
LBNL-52152. Yang, Q. and B. Parvin (2003). High resolution reconstruction of sparse data from dense low resolution spatio-temporal data. IEEE Transaction on Image Processing.
LBNL-52103. Bell, C., D. Bonachea, Y. Cote, J. Duell, P. Hargrove, P. Husbands, C. Iancu, M. Welcome and K. Yelick (2003). An evaluation of current high-performance networks. 17th International Parallel and Distributed Processing Symposium (IPDPS), 2003, Nice, France. http://www-library.lbl.gov/docs/LBNL/521/03/PDF/LBNL-52103.pdf
LBNL-51868. Bresson, E., O. Chevassut and D. Pointcheval (2003). Security Proofs for an efficient password-based key exchange. 10th ACM Conference on Computer and Communications Security (ACM CCS'03), Washington DC.
LBNL-51867. Fleischer, L. K., B. Hendrickson and A. Pinar (2003). A divide-and-conquer algorithm for identifying strongly connected components. Networks: An International Journal.
LBNL-51863. Pinar, A. and B. Hendrickson (2003). Interprocessor communication with limited memory. IEEE Transactions on Parallel and Distributed Systems.
LBNL-51849. Yang, Q. and B. Parvin (2003). Harmonic cut and regularized centroid transform for localization of subcellular structures. IEEE Transaction on Biomedical Engineeing.
LBNL-51743. Li, J. and L.-w. Wang (2003). High energy excitations in CdSe quantum rods. Nano letters 3(1).
LBNL-51202. Parvin, B., Q. Yang, G. Fontenay and M. Barcellos-Hoff (2003). An image-based informatics system for phenotypic studies. IEEE Computers.
LBNL/PUB-895. Simon, H. D. (2003). Manipulating and Visualizing Proteins. http://www-library.lbl.gov/docs/PUB/895/PDF/PUB-895.pdf | http://www-library.lbl.gov/docs/PUB/895/SRC/PUB-895.doc
LBNL/PUB-886. Bethel, E. W., R. Frank, S. Fulcomer, C. Hansen, K. Joy, J. Kohl and D. Middleton (2003). Visual Data Exploration and Analysis - Report on the Visualization Breakout Session of the SCaLeS Workshop. http://www-library.lbl.gov/docs/PUB/886/PDF/PUB-886.pdf
LBNL/PUB-3176. Drummond, L. A., O. A. Marques and G. V. Wilson (2003). An infrastructure for the creation of high end scientific and enginee ring software tools and applications. http://www-library.lbl.gov/docs/PUB/3176/PDF/PUB-3176.pdf
2002
LBNL-54908. Oliker, L., P. Husbands, A. Janin and X. S. Li (2002). Scientific kernels on VIRAM and imagine media processors. http://www-library.lbl.gov/docs/LBNL/549/08/PDF/LBNL-54908.pdf
LBNL-53897. Drummond, L. A. and O. A. Marques (2002). Acts -- A collection of high performing software tools for scientific computing. Tenth ECMWF Workshop on the Use of HPC in Meteorology, European Centre for Medium-Range Weather Forecasts,Reading, England, World Scientific.
LBNL-53114. Shan, H., J. P. Singh, L. Oliker and R. Biswas (2002). Message passing and shared address space parallelism on an SMP cluster. Parallel Computing 29.
LBNL-53113. Oliker, L., X. Li, P. Husbands and R. Biswas (2002). Effects of ordering strategies and programming paradigms on sparse matrix computations. SIAM review 44(3).
LBNL-50520. Grigori, L. and X. S. Li (2002). A new scheduling algorithm for parallel sparse LU factorization with static pivoting. SC2002, Baltimore. http://www-library.lbl.gov/docs/LBNL/505/20/PDF/LBNL-50520.pdf
LBNL/PUB-3175. Drummond, T. and O. Marques (2002). The ACTS collection robust and high-performance tools for scientific computing: Guidelines for tool inclusion and retirement. http://www-library.lbl.gov/docs/PUB/3175/PDF/PUB-3175.pdf |
